Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Geob_0902TPR domain protein. (627 aa)    
Predicted Functional Partners:
Geob_0642
Glycosyltransferase, exostosin-like, TPR domain-containing.
 
 
 0.909
Geob_0641
Glycosyltransferase, putative, TPR domain-containing.
 
 
0.852
Geob_3428
TPR domain protein.
 
     0.747
Geob_1269
Ankyrin repeat protein.
 
 0.726
Geob_3236
Long-chain acyl-CoA synthetase; Acyl-(acyl carrier protein) ligase, acyl carrier, (acyl)-sn-glycerol-3-phosphate acyltransferase fusion protein.
 
 
 0.713
Geob_3447
TPR domain protein.
 
   0.710
Geob_0648
TPR domain protein.
 
 
 0.708
Geob_1306
Pentapeptide repeat protein.
 
  
 0.690
Geob_1874
Mannose-1-phosphate guanylyltransferase; Truncated mannose-6-phosphate isomerase domain.
  
  
 0.681
Geob_1007
Mannose-1-phosphate guanylyltransferase and mannose-6-phosphate isomerase-related protein.
  
  
 0.672
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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