Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_0953Protein of unknown function DUF116. (255 aa)    
Predicted Functional Partners:
def-1
Polypeptide formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.822
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.822
Geob_0954
Hypothetical protein.
       0.773
Geob_0955
Hypothetical protein.
       0.633
Geob_0956
Hypothetical protein.
       0.616
korD
2-oxoglutarate:ferredoxin oxidoreductase, ferredoxin subunit.
  
     0.510
Geob_0949
Efflux pump, RND family, membrane fusion lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.500
Geob_0948
Efflux pump, RND family, inner and outer membrane proteins; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.472
Geob_0950
Helix-turn-helix transcriptional regulator, TetR family.
       0.454
Geob_0479
Redox-active protein, C_GCAxxG_C_C family, putative.
  
     0.441
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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