Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_1065TRAP transporter, large membrane protein component. (434 aa)    
Predicted Functional Partners:
Geob_1064
TRAP transporter small membrane protein component, putative.
 
 
 0.982
Geob_1063
TRAP proton/solute symporter, periplasmic substrate-binding protein.
 
  
 0.923
Geob_0196
TRAP proton/solute symporter, large membrane protein component.
  
  
 
0.915
Geob_0197
TRAP proton/solute symporter, small membrane protein component.
 
 
 0.871
Geob_0195
TRAP proton/solute symporter, periplasmic substrate-binding protein.
 
  
 0.828
Geob_3331
TRAP proton/solute symporter, periplasmic substrate-binding protein.
 
  
 0.828
sfsA
DNA-binding protein SfsA; Belongs to the SfsA family.
       0.773
iorB-2
Indolepyruvate:ferredoxin oxidoreductase, beta subunit.
     
 0.503
iorA-2
Indolepyruvate:ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.502
paaK-3
Phenylacetate--coenzyme A ligase.
       0.502
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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