Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
chrGType II secretion system major pseudopilin ChrG. (163 aa)    
Predicted Functional Partners:
gspK
Type II secretion system minor pseudopilin GspK.
 
 
 0.816
Geob_1072
Cyclic diguanylate phosphodiesterase, HAMP domain-containing; Domains: HAMP, HD-GYP.
     
 0.785
gspJ
Type II secretion system minor pseudopilin GspJ.
  
 
 0.778
Geob_2620
Competence protein, ComEC-related, putative.
  
  
 0.666
gspF
Type II secretion system inner membrane protein GspF.
  
  
 0.625
pulF
Type II secretion system inner membrane protein PulF.
  
  
 0.625
pilC
Type IV pilus inner membrane protein PilC.
  
  
 0.625
Geob_1071
Cyclic nucleotide-binding protein.
 
     0.615
pilD
Type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.571
Geob_3505
Response regulator; Domains: REC.
  
 
 0.567
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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