STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_1165Hypothetical protein. (85 aa)    
Predicted Functional Partners:
Geob_1166
acyl-CoA thioesterase.
       0.608
Geob_2444
Protein of unknown function DUF1329.
  
     0.562
Geob_1151
Pyridoxal-5'-phosphate-dependent decarboxylase.
  
     0.540
Geob_2442
Exporter, RND superfamily, putative.
  
     0.520
Geob_2445
Protein of unknown function DUF1302.
  
     0.504
gapB
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.502
Geob_3194
Peptidoglycan-binding domain protein, putative.
  
     0.473
Geob_2443
Repeat-containing protein.
  
     0.443
Geob_1164
NADPH-dependent aldehyde reductase.
       0.428
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.