STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_1283Hypothetical protein. (2108 aa)    
Predicted Functional Partners:
tolB
Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.761
Geob_1282
Phage tail collar domain protein.
 
     0.695
Geob_1281
Phage tail collar domain protein.
 
     0.683
Geob_1280
Phage tail collar domain protein.
 
     0.672
Geob_1278
N-acetyltransferase, GNAT family.
 
 
   0.572
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.520
Geob_1284
Lipoprotein, putative.
       0.512
Geob_2310
Murein/chitin-binding protein, LysM, LysM and NLPC_P60 domain-containing; Domains: LysM, LysM, NLPC_P60.
  
 
 0.491
Geob_2749
NLPC_P60 superfamily protein.
  
 
 0.491
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
 
 0.463
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.