Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Geob_1306Pentapeptide repeat protein. (1013 aa)    
Predicted Functional Partners:
cheY40H-3
Response receiver CheY associated with MCPs of class 40H.
  
 
 0.982
Geob_3566
Response receiver; Domains: REC.
  
 
 0.978
cheV
Response receiver scaffold protein CheV; Domains: CheW, REC.
 
 
 0.973
Geob_1844
Sensor histidine kinase response receiver, 4HB_MCP_1 and GAF domain-containing; Domains: 4HB_MCP_1, GAF, HisKA, HATPase_c, REC, REC, REC.
  
 
 0.962
Geob_1173
Sensor histidine kinase response regulator, HAMP and PAS domain-containing; Domains: HAMP, PAS, HisKA, HATPase_c, REC.
  
 
 0.956
Geob_3574
Response receiver; Domains: REC.
  
 
 0.956
cheBR
Protein glutamate methylesterase CheB and methyltransferase CheR.
  
 
 0.946
Geob_1072
Cyclic diguanylate phosphodiesterase, HAMP domain-containing; Domains: HAMP, HD-GYP.
  
 
 0.931
Geob_0499
Hypothetical protein.
 
    0.928
Geob_3226
Two-component system, cell cycle sensor histidine kinase and response regulator CckA; Domains: PBPb, PAS, HisKA, HATPase_c, REC.
  
 
 0.924
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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