STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdA-1Cytochrome c biogenesis protein CcdA. (242 aa)    
Predicted Functional Partners:
resA
Apocytochrome c disulfide reductase lipoprotein ResA.
  
 0.986
Geob_1526
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein.
       0.790
Geob_1529
Sigma-54-dependent transcriptional response regulator; Domains: REC, sigma54 interaction, HTH8.
       0.737
Geob_2731
TlpA family-related protein disulfide reductase.
 
  
 0.687
Geob_1530
Sensor histidine kinase; Domains: HisKA, HATPase_c.
       0.673
Geob_1304
Thioredoxin-related protein disulfide reductase, putative.
 
  
 0.563
Geob_1301
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.484
Geob_1531
Hypothetical protein.
       0.474
Geob_0601
Resolvase-like serine recombinase.
  
    0.438
hemY
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
  
 0.428
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.