Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
speAArginine decarboxylase, biosynthetic type; Catalyzes the biosynthesis of agmatine from arginine. (635 aa)    
Predicted Functional Partners:
Geob_1676
Carboxynorspermidine/carboxyspermidine dehydrogenase.
 
  
 0.963
aguA
Agmatine deiminase, putative; Belongs to the agmatine deiminase family.
 
  
 0.956
Geob_1013
Arginase; Belongs to the arginase family.
  
 
 0.950
argH
Argininosuccinate lyase.
     
 0.833
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.764
fabD-2
malonyl-CoA--acyl carrier protein transacylase.
   
    0.555
fabD-1
malonyl-CoA--acyl carrier protein transacylase.
   
    0.494
aguB
N-carbamylputrescine amidohydrolase.
 
  
 0.484
gpsA
Sn-glycerol-3-phosphate 2-dehydrogenase, NAD(P)-dependent; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
    0.427
asnS
asparaginyl-tRNA synthetase.
  
    0.418
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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