Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
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Co-expression
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[Homology]
Score
Geob_1682Lipoprotein cytochrome c, 9 heme-binding sites. (590 aa)    
Predicted Functional Partners:
oma-1
Cytochrome c, 8 heme-binding sites.
 
  
 0.859
omb-1
Outer membrane channel, putative.
  
    0.761
Geob_3357
Hypothetical protein.
 
     0.750
Geob_3313
Hypothetical protein.
  
     0.747
gspL
Type II secretion system protein GspL, putative.
  
     0.740
Geob_2140
Hypothetical protein.
 
     0.721
Geob_2170
Cytochrome c, 27 heme-binding sites.
  
     0.718
Geob_1222
Hypothetical protein.
 
     0.716
oma-2
Cytochrome c, 9 heme-binding sites.
 
  
 0.707
Geob_3256
Metallophosphoesterase, putative.
 
     0.703
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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