Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_1683Protein of unknown function, DUF3108-containing. (379 aa)    
Predicted Functional Partners:
Geob_1686
Cytochrome c, 11 heme-binding sites.
     
 0.737
Geob_1502
Hypothetical protein.
  
     0.648
Geob_1682
Lipoprotein cytochrome c, 9 heme-binding sites.
 
     0.603
Geob_3490
Hypothetical protein.
  
     0.580
Geob_2170
Cytochrome c, 27 heme-binding sites.
  
     0.542
Geob_3376
Polyprenyl-phospho-glycoside--protein O-glycosyltransferase DUF2723 membrane protein, putative.
  
     0.534
Geob_1479
Membrane protein, putative.
  
     0.530
Geob_1863
Cytochrome c, 1 heme-binding site.
  
     0.529
Geob_3815
Hypothetical protein.
  
     0.521
Geob_3256
Metallophosphoesterase, putative.
  
     0.520
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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