Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Geob_1691Bis-(molybdopterin guanine dinucleotide)-oxotungsten-binding oxidoreductase and desulfurase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1139 aa)    
Predicted Functional Partners:
nifU
Nitrogen fixation iron-sulfur cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.998
pcmE
Menaquinol oxidoreductase complex, iron-sulfur cluster-binding subunit.
 
 
 0.837
cbcO
Menaquinol oxidoreductase complex Cbc6, iron-sulfur cluster-binding subunit, putative.
   
 0.814
tusA
tRNA (5-carboxymethylaminomethyl-2-thiouridine34) synthesis sulfur carrier protein.
   
 
 0.781
Geob_1692
Protein of unknown function TIGR03438.
     
 0.781
bamH-1
benzoyl-CoA reductase electron transfer protein, putative.
  
 
 0.731
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.710
Geob_3146
Flavin oxidoreductase, PfaD family, putative.
   
 
 0.675
yedF
Selenium metabolism protein YedF, putative; Belongs to the sulfur carrier protein TusA family.
   
 
 0.667
bamC-3
benzoyl-CoA reductase, iron-sulfur cluster-binding subunit, putative.
 
 
 0.640
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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