Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_1900Polysaccharide deacetylase and DUF3473 domain protein. (281 aa)    
Predicted Functional Partners:
Geob_1901
Undecaprenyl-phosphate glycosyltransferase, putative.
 
  
 0.804
Geob_2975
FemAB superfamily protein.
 
   
 0.799
Geob_2980
Polysaccharide chain length determinant protein.
 
     0.774
epsH
Exopolysaccharide synthesis membrane protein H (exosortase).
 
     0.769
Geob_2966
O-antigen polymerase, putative.
 
   
 0.752
Geob_2982
Undecaprenyl-phosphate glycosylphosphotransferase.
 
   
 0.712
Geob_2979
Protein tyrosine kinase, putative.
 
   
 0.668
Geob_2981
Periplasmic polysaccharide biosynthesis/export protein.
 
   
 0.647
Geob_1902
Radical SAM domain iron-sulfur cluster-binding oxidoreductase.
       0.631
Geob_1903
Radical SAM domain iron-sulfur cluster-binding oxidoreductase with cobamide-binding-like domain.
       0.620
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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