Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
iscR-2Helix-turn-helix iron-sulfur cluster-binding transcriptional regulator IscR. (141 aa)    
Predicted Functional Partners:
nifS-2
Nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.842
nifU
Nitrogen fixation iron-sulfur cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.838
cysE
Serine O-acetyltransferase.
  
  
 0.795
mnmA
tRNA (5-carboxymethylaminomethyluridine34-C2)--thiol ligase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.627
Geob_1691
Bis-(molybdopterin guanine dinucleotide)-oxotungsten-binding oxidoreductase and desulfurase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.621
nifS-3
Nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS.
  
  
 0.599
nifS-4
Nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS.
  
  
 0.599
nifS-1
Nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.599
Geob_1983
Response receiver sensor histidine kinase, GAF and PAS domain-containing; Domains: REC, GAF, PAS, HisKA, HATPase_c.
     
 0.558
mtaB
tRNA (6-N-(L-threonyl-N)-carbonyladenosine37-C2)- methylthiotransferase.
  
  
 0.525
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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