Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_2000Aminotripeptidase PepT-like protease. (369 aa)    
Predicted Functional Partners:
Geob_1764
Glu/Leu/Phe/Val dehydrogenase superfamily protein.
   
    0.788
yqfO
Dimetal-binding protein YqfO; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
    0.734
rsmA
16S rRNA (adenosine1518-N6/adenosine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
    
 0.671
fumB
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.613
Geob_3058
Prolidase family protein.
 
 
 0.562
Geob_3550
Prolidase family protein.
 
 
 0.542
Geob_2904
Aminopeptidase, putative.
 
 
 0.540
Geob_1850
Ketose-1,6-bisphosphate aldolase, class II, putative.
  
  
 0.520
Geob_1999
SAP domain protein.
       0.501
cinA
Molybdopterin-binding domain nicotinamide nucleotide amidohydrolase, putative; Belongs to the CinA family.
   
  
 0.422
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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