Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_2013Protein of unknown function DUF2495. (145 aa)    
Predicted Functional Partners:
Geob_1373
Cytochrome c, 27 heme-binding sites.
  
     0.714
Geob_1540
Hypothetical protein.
  
     0.677
Geob_1430
Cytochrome c, 8 heme-binding sites.
  
     0.598
Geob_2514
PilZ domain protein.
  
     0.583
Geob_2641
Cytochrome c, 8 heme-binding sites.
  
     0.581
Geob_2339
Hypothetical protein.
  
     0.560
Geob_2902
Cupin superfamily barrel domain protein.
  
     0.557
Geob_1082
Ferritin-like domain protein.
  
     0.536
Geob_2372
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
     0.530
Geob_2014
Membrane protein of unknown function DUF502.
       0.524
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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