Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_2015Metal-dependent phosphohydrolase; Domains: HDOD. (427 aa)    
Predicted Functional Partners:
Geob_2014
Membrane protein of unknown function DUF502.
       0.580
fliA
RNA polymerase sigma-28 factor for flagellar operon; Belongs to the sigma-70 factor family.
 
     0.541
flgH
Flagellar L-ring lipoprotein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.536
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.524
motA
Flagellar basal body stator protein MotA.
 
     0.501
fliE
Flagellar hook-basal body complex protein FliE.
 
     0.500
fliM
Flagellar motor switch protein FliM.
 
     0.477
flgA
Flagellar basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
     0.470
flgG
Flagellar basal body rod protein FlgG.
 
    0.462
Geob_2271
Cyclic diguanylate phosphodiesterase; Domains: EAL.
  
     0.449
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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