Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tyvCDP-paratose 2-epimerase. (339 aa)    
Predicted Functional Partners:
Geob_2129
Membrane protein, putative.
  
  
 0.970
prt
CDP-3, 6-dideoxy-alpha-D-erythro-hexopyranos-4-ulose 4-(Re)-reductase.
 
  
 0.936
Geob_3241
NAD-dependent nucleoside-5'-diphosphate-sugar epimerase/dehydratase.
 
 
0.920
Geob_2135
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.903
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.896
ddhC
CDP-6-deoxy-alpha-D-xylo-hexopyranos-4-ulose 3-dehydratase/3-reductase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.879
ddhA
Glucose-1-phosphate cytidylyltransferase.
 
  
 0.872
Geob_3480
Nucleoside-5'-diphosphate-sugar dehydratase, putative.
  
  
 0.872
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.856
Geob_2131
Glycosyltransferase.
  
  
 0.848
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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