Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_2132Hypothetical protein. (414 aa)    
Predicted Functional Partners:
tyv
CDP-paratose 2-epimerase.
       0.773
Geob_2129
Membrane protein, putative.
       0.773
Geob_2130
Glycosyltransferase.
       0.773
Geob_2131
Glycosyltransferase.
       0.773
Geob_2133
Glycosyltransferase.
       0.773
ddhA
Glucose-1-phosphate cytidylyltransferase.
       0.718
ddhB
CDP-glucose 4,6-dehydratase.
       0.718
ddhC
CDP-6-deoxy-alpha-D-xylo-hexopyranos-4-ulose 3-dehydratase/3-reductase; Belongs to the DegT/DnrJ/EryC1 family.
       0.718
prt
CDP-3, 6-dideoxy-alpha-D-erythro-hexopyranos-4-ulose 4-(Re)-reductase.
       0.718
wbjB-2
UDP-N-acetylglucosamine 4,6-dehydratase and UDP-2-acetamido-2, 6-dideoxy-alpha-D-xylo-hexopyranos-4-ulose 5-epimerase.
       0.709
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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