Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_2219Antitoxin, AbrB family. (75 aa)    
Predicted Functional Partners:
vapC
Toxin, PIN family; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 0.994
Geob_1146
Toxin, PIN family.
 
 
 0.936
Geob_1815
Toxin, PIN family.
 
 
 0.849
vapC-2
Toxin, PIN family; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 0.834
Geob_3270
Toxin, PIN family.
 
 
 0.773
Geob_2220
Pyridoxamine-5'-phosphate oxidase-related FMN-binding protein.
       0.495
Geob_2822
Protein of unknown function DUF497.
  
   
 0.490
Geob_2821
Hypothetical protein.
  
     0.479
Geob_1973
Toxin, RelE family.
  
     0.439
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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