Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Geob_2240Hypothetical protein. (424 aa)    
Predicted Functional Partners:
Geob_2239
Hypothetical protein.
 
    0.709
Geob_2238
Hypothetical protein.
       0.651
Geob_1914
Outer membrane lipoprotein carrier/sorting protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.612
Geob_2237
ATPase, putative.
       0.590
Geob_1714
Protein of unknown function DUF2845.
  
     0.562
pilP
Type IV pilus assembly lipoprotein PilP.
  
     0.549
Geob_1622
Protein of unknown function, MJ0042_CXXC and DUF3426 domain-containing.
  
     0.540
Geob_3684
Hypothetical protein.
  
     0.540
Geob_2388
Hypothetical protein.
  
     0.521
Geob_0756
TPR domain protein.
  
     0.520
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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