STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_2358Hypothetical protein. (251 aa)    
Predicted Functional Partners:
rsmB
16S rRNA (cytidine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.775
Geob_2356
ABC transporter, membrane protein.
       0.768
Geob_2357
ABC transporter, membrane protein.
       0.768
hemD
Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase.
  
    0.678
Geob_0847
Kef-type potassium transporter, NAD-binding protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.665
Geob_2355
ABC transporter, ATP-binding protein.
   
 
 0.618
selA
selenophosphate--L-seryl-tRNA(Sec) selenotransferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
   
    0.608
pheA
Chorismate mutase and prephenate dehydratase.
       0.531
Geob_2354
Efflux pump, RND family, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.528
por
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
 
 0.467
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.