Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
etfA-5Electron transfer flavoprotein, alpha subunit. (295 aa)    
Predicted Functional Partners:
etfB-5
Electron transfer flavoprotein, beta subunit.
 
 0.997
bamO/etfB-4
Electron transfer flavoprotein, beta subunit.
 0.978
etfB-2
Electron transfer flavoprotein, beta subunit.
 0.970
etfB-3
Electron transfer flavoprotein, beta subunit.
 0.970
bbsG
(R)-benzylsuccinyl-CoA dehydrogenase.
 
 
 0.905
Geob_2191
Short-chain acyl-CoA dehydrogenase.
 
 
 0.874
Geob_2190
Short-chain acyl-CoA dehydrogenase.
 
 
 0.869
Geob_2186
Short-chain acyl-CoA dehydrogenase.
 
 
 0.857
Geob_2426
Electron transfer flavoprotein-associated cytochrome b and CCG domain pair iron-sulfur cluster-binding oxidoreductase.
 
  
 0.845
Geob_0237
glutaryl-CoA dehydrogenase, non-decarboxylating.
 
 
 0.844
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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