Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
nikO-2Nickel ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (252 aa)    
Predicted Functional Partners:
nikQ-2
Nickel ABC transporter, membrane protein NikQ.
 
 0.997
nikQ-1
Nickel ABC transporter, membrane protein NikQ.
 
 0.990
cbiQ
Cobalt ABC transporter, membrane protein CbiQ.
 
 0.988
nikMN-2
Nickel ABC transporter, membrane protein NikMN.
 
 
 0.985
nikMN-1
Nickel ABC transporter, membrane protein NikMN.
 
 
 0.963
cbiM
Cobalt ABC transporter, membrane protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
 
 
 0.954
cbiO
Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
  
  
 
0.913
nikO-1
Nickel ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
  
  
 
0.901
cbiN
Cobalt ABC transporter, membrane protein CbiN.
    
  0.810
lptB
Lipopolysaccharide ABC transporter, ATP-binding protein.
 
   
 
0.733
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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