STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_2520Cyclic diguanylate phosphodiesterase; Domains: HD-GYP. (320 aa)    
Predicted Functional Partners:
Geob_1896
Sensor diguanylate cyclase, PAS domain-containing; Domains: PAS, GGDEF.
    0.937
Geob_3023
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
  
 0.863
Geob_1409
Diguanylate cyclase; Domains: GGDEF.
  
 0.850
Geob_0741
Response receiver histidine kinase; Domains: REC, HisKA.
 
   0.780
Geob_0296
Diguanylate cyclase; Domains: GGDEF.
 
    0.753
Geob_1314
Sensor diguanylate cyclase, DUF3365-containing, heme-binding; Domains: DUF3365, GGDEF.
 
    0.751
Geob_3426
Diguanylate cyclase; Domains: GGDEF.
 
    0.749
Geob_1544
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF; possible homopolymeric tract sequence error.
 
  
 0.736
Geob_1534
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
  
 0.731
Geob_1992
Cyclic diguanylate phosphodiesterase; Domains: EAL.
 
  
 0.707
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.