Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Geob_2728 | Geob_2729 | Geob_2728 | Geob_2729 | Hypothetical protein. | Hypothetical protein. | 0.718 |
Geob_2728 | Geob_2731 | Geob_2728 | Geob_2731 | Hypothetical protein. | TlpA family-related protein disulfide reductase. | 0.471 |
Geob_2728 | ccdA-2 | Geob_2728 | Geob_2730 | Hypothetical protein. | Cytochrome c biogenesis protein CcdA. | 0.483 |
Geob_2729 | Geob_2728 | Geob_2729 | Geob_2728 | Hypothetical protein. | Hypothetical protein. | 0.718 |
Geob_2729 | Geob_2731 | Geob_2729 | Geob_2731 | Hypothetical protein. | TlpA family-related protein disulfide reductase. | 0.531 |
Geob_2729 | ccdA-2 | Geob_2729 | Geob_2730 | Hypothetical protein. | Cytochrome c biogenesis protein CcdA. | 0.543 |
Geob_2731 | Geob_2728 | Geob_2731 | Geob_2728 | TlpA family-related protein disulfide reductase. | Hypothetical protein. | 0.471 |
Geob_2731 | Geob_2729 | Geob_2731 | Geob_2729 | TlpA family-related protein disulfide reductase. | Hypothetical protein. | 0.531 |
Geob_2731 | Geob_2732 | Geob_2731 | Geob_2732 | TlpA family-related protein disulfide reductase. | Arylsulfotransferase. | 0.558 |
Geob_2731 | ccdA-1 | Geob_2731 | Geob_1527 | TlpA family-related protein disulfide reductase. | Cytochrome c biogenesis protein CcdA. | 0.687 |
Geob_2731 | ccdA-2 | Geob_2731 | Geob_2730 | TlpA family-related protein disulfide reductase. | Cytochrome c biogenesis protein CcdA. | 0.924 |
Geob_2731 | dsbA | Geob_2731 | Geob_2734 | TlpA family-related protein disulfide reductase. | Disulfide bond formation oxidoreductase DsbA. | 0.493 |
Geob_2731 | dsbB | Geob_2731 | Geob_2733 | TlpA family-related protein disulfide reductase. | Disulfide bond formation oxidoreductase DsbB. | 0.520 |
Geob_2731 | pdxJ | Geob_2731 | Geob_3418 | TlpA family-related protein disulfide reductase. | Pyridoxine-5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.473 |
Geob_2731 | ribD | Geob_2731 | Geob_2675 | TlpA family-related protein disulfide reductase. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.434 |
Geob_2732 | Geob_2731 | Geob_2732 | Geob_2731 | Arylsulfotransferase. | TlpA family-related protein disulfide reductase. | 0.558 |
Geob_2732 | ccdA-2 | Geob_2732 | Geob_2730 | Arylsulfotransferase. | Cytochrome c biogenesis protein CcdA. | 0.545 |
Geob_2732 | dsbA | Geob_2732 | Geob_2734 | Arylsulfotransferase. | Disulfide bond formation oxidoreductase DsbA. | 0.861 |
Geob_2732 | dsbB | Geob_2732 | Geob_2733 | Arylsulfotransferase. | Disulfide bond formation oxidoreductase DsbB. | 0.875 |
ccdA-1 | Geob_2731 | Geob_1527 | Geob_2731 | Cytochrome c biogenesis protein CcdA. | TlpA family-related protein disulfide reductase. | 0.687 |
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