Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
livGBranched-chain amino acid ABC transporter, ATP-binding protein. (251 aa)    
Predicted Functional Partners:
livH
Branched-chain amino acid ABC transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
livM
Branched-chain amino acid ABC transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livF
Branched-chain amino acid ABC transporter, ATP-binding protein.
 
 
0.998
livK-1
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative.
 
 
 0.997
livK-2
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative.
 
 
 0.996
Geob_3442
ABC transporter, periplasmic substrate-binding lipoprotein, putative.
 
 
 0.993
Geob_3515
ABC transporter, periplasmic substrate-binding protein.
 
 
 0.993
paaK-1
Phenylacetate--coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
    0.762
Geob_2805
Hypothetical protein.
       0.558
Geob_3236
Long-chain acyl-CoA synthetase; Acyl-(acyl carrier protein) ligase, acyl carrier, (acyl)-sn-glycerol-3-phosphate acyltransferase fusion protein.
  
  
 0.491
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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