Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
paaK-1Phenylacetate--coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (434 aa)    
Predicted Functional Partners:
Geob_2797
ACT domain protein.
 
   0.786
livF
Branched-chain amino acid ABC transporter, ATP-binding protein.
 
    0.781
livH
Branched-chain amino acid ABC transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.768
livG
Branched-chain amino acid ABC transporter, ATP-binding protein.
  
    0.762
livM
Branched-chain amino acid ABC transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.761
Geob_0158
ACT domain protein.
 
   0.657
livK-1
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative.
 
    0.630
Geob_2805
Hypothetical protein.
       0.598
livK-2
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative.
 
    0.584
putA
Proline dehydrogenase and Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.423
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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