Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_2855Membrane protein, major facilitator superfamily. (431 aa)    
Predicted Functional Partners:
Geob_1154
Membrane protein, major facilitator superfamily.
  
  
0.933
Geob_0246
Electron transfer flavoprotein-associated cytochrome b and CCG domain pair iron-sulfur cluster-binding oxidoreductase.
  
  
 0.820
hemD
Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase.
  
  
 0.600
Geob_1243
Ferredoxin, Rieske superfamily.
  
  
 0.505
Geob_3146
Flavin oxidoreductase, PfaD family, putative.
     
 0.493
nifU
Nitrogen fixation iron-sulfur cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.468
tusA
tRNA (5-carboxymethylaminomethyl-2-thiouridine34) synthesis sulfur carrier protein.
     
 0.459
Geob_2285
Phosphotransferase system, mannose-type, protein IIA.
   
  
 0.443
Geob_2896
Sensor histidine kinase, HAMP and PAS domain-containing; Domains: HAMP, PAS, HisKA, HATPase_c; possible homopolymeric tract sequence error.
     
 0.435
sfrA
NADPH oxidoreductase, alpha subunit.
 
  
 0.426
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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