STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_2937ComEA-related DNA-binding/uptake protein. (189 aa)    
Predicted Functional Partners:
cimA
Citramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.821
Geob_2620
Competence protein, ComEC-related, putative.
  
  
 0.591
pilD
Type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.587
Geob_2939
Aspartate 4-kinase; Belongs to the aspartokinase family.
       0.580
rodA
Peptidoglycan glycosyltransferase MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
    0.536
gspF
Type II secretion system inner membrane protein GspF.
  
  
 0.502
pulF
Type II secretion system inner membrane protein PulF.
  
  
 0.502
pilC
Type IV pilus inner membrane protein PilC.
  
  
 0.502
Geob_2936
Hypothetical protein.
       0.495
Geob_0712
Competence protein CoiA-related protein.
   
  
 0.491
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.