Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_2955ABC transporter, ATP-binding protein. (397 aa)    
Predicted Functional Partners:
Geob_2954
ABC transporter, membrane protein, ABC-2 family.
 
  
 0.986
Geob_1442
ABC transporter, membrane protein.
 
  
 0.957
Geob_2956
Glycosyltransferase.
 
 
   0.805
Geob_2953
Polysaccharide deacetylase domain protein.
     
 0.655
Geob_2952
Hypothetical protein.
  
    0.616
Geob_2957
Glycosyltransferase.
 
 
   0.613
Geob_2958
Glycosyltransferase.
 
 
   0.607
Geob_0013
ABC transporter, membrane protein, ABC-2 family.
  
  
 0.552
Geob_2959
Glycosyltransferase, WlbH-like family.
   
   0.551
Geob_2951
acyl-CoA synthetase, AMP-forming.
  
    0.533
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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