Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_2986Peptidase, CARDB domain repeat-containing, putative. (1989 aa)    
Predicted Functional Partners:
Geob_1366
Hypothetical protein.
 
 
 
 0.839
Geob_0072
Serine protease, subtilase family; Belongs to the peptidase S8 family.
 
 
 
 0.609
Geob_1639
Serine protease, subtilase family, DUF11 domain-containing.
 
 
 
 0.568
bamH-2
benzoyl-CoA reductase electron transfer protein, putative.
  
    0.525
Geob_3226
Two-component system, cell cycle sensor histidine kinase and response regulator CckA; Domains: PBPb, PAS, HisKA, HATPase_c, REC.
  
 
 0.476
ompB
Laccase family multicopper oxidase.
  
    0.454
Geob_1795
Cell division protein DivIVA, putative.
  
 
 0.431
Geob_3146
Flavin oxidoreductase, PfaD family, putative.
  
  
 0.420
Geob_3893
Hypothetical protein.
       0.416
Geob_1072
Cyclic diguanylate phosphodiesterase, HAMP domain-containing; Domains: HAMP, HD-GYP.
   
 
 0.409
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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