Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Geob_3035Peptide ABC transporter, periplasmic peptide-binding lipoprotein. (538 aa)    
Predicted Functional Partners:
Geob_3033
Peptide ABC transporter, membrane protein.
 0.999
Geob_3034
Peptide ABC transporter, membrane protein.
 0.999
Geob_3455
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.992
Geob_3456
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.992
por
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
  
 0.874
Geob_3036
TPR domain protein.
 
   
 0.851
Geob_3032
Hypothetical protein.
       0.714
Geob_3031
Peptidase lipoprotein, M48 family.
  
    0.707
Geob_3039
Sodium/solute symporter, GAF and PP2C family protein serine/threonine phosphatase domain protein.
     
 0.602
flgF
Flagellar basal body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.560
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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