Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rsbVAnti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (111 aa)    
Predicted Functional Partners:
rsbW
Anti-sigma factor, protein serine/threonine kinase.
 
 
 0.998
Geob_0264
Domains: sensory_box, SpoIIE.
 
 
 0.927
Geob_3039
Sodium/solute symporter, GAF and PP2C family protein serine/threonine phosphatase domain protein.
 
 
 0.927
Geob_1996
Protein serine/threonine phosphatase, PP2C family, CBS domain pair-containing.
 
 
 0.915
Geob_0134
Sensor protein serine/threonine phosphatase, PP2C family, PAS, PAS, PAS and PP2C domain-containing; Domains: PAS, PAS, PAS, PP2C.
 
 
 0.913
flgE
Flagellar hook protein FlgE.
   
    0.904
flgB
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.896
flgH
Flagellar L-ring lipoprotein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.896
fliG
Flagellar motor switch protein FliG.
  
   0.894
Geob_3566
Response receiver; Domains: REC.
  
  
 0.891
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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