STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_3131Fibronectin type III repeat protein. (2066 aa)    
Predicted Functional Partners:
Geob_3309
Squalene cyclase domain protein.
  
  
  0.958
Geob_1791
CADG domain protein.
  
  
  0.950
Geob_0814
CARDB domain repeat-containing isoprenoid cyclase, putative.
  
  
  0.927
Geob_1512
Fibronectin type III repeat protein.
  
  
 
0.926
Geob_3465
Alpha-2-macroglobulin domain protein.
  
  
  0.919
Geob_3132
Cytochrome c, 37 heme-binding sites.
       0.773
Geob_3357
Hypothetical protein.
 
     0.764
Geob_1237
Hypothetical protein.
  
     0.744
Geob_1863
Cytochrome c, 1 heme-binding site.
  
     0.734
gspL
Type II secretion system protein GspL, putative.
  
     0.723
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.