Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Geob_3203Helix-turn-helix transcriptional regulator, XRE family. (126 aa)    
Predicted Functional Partners:
Geob_3204
Phospholipase, patatin family, putative.
       0.642
ylxRQ
RNA-binding protein YlxRQ, putative.
 
     0.630
flbT
Flagellar biogenesis repressor FlbT.
  
     0.614
Geob_2148
YdcF-like protein of unknown function DUF218.
  
     0.534
fliC
Flagellin.
  
   
 0.513
pepF
Oligoendopeptidase F.
 
     0.488
flaF
Flagellar biogenesis regulator FlaF.
  
     0.454
Geob_3205
Hypothetical protein.
       0.432
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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