Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_3207Ligand-gated TonB-dependent outer membrane channel. (607 aa)    
Predicted Functional Partners:
Geob_1100
Periplasmic energy transduction protein, TonB-related.
 
 
 
 0.860
Geob_3206
ABC transporter, periplasmic substrate-binding protein.
 
   
 0.826
Geob_1803
Periplasmic energy transduction protein, TonB-related.
 
 
 
 0.810
Geob_2883
Hypothetical protein.
   
 
 0.751
Geob_0622
Outer membrane surface lipoprotein.
  
   
 0.691
Geob_1306
Pentapeptide repeat protein.
  
     0.668
Geob_0490
Hypothetical protein.
  
     0.665
pilQ
Type IV pilus secretin lipoprotein PilQ.
 
 
 
 0.660
Geob_3395
Efflux pump, RND family, outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
   
 0.648
Geob_3146
Flavin oxidoreductase, PfaD family, putative.
   
 
 0.644
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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