STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_3345ResB-like family cytochrome c biogenesis protein. (384 aa)    
Predicted Functional Partners:
Geob_3344
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.842
hemD
Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase.
  
    0.705
Geob_0056
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.597
Geob_3343
Hypothetical protein.
       0.597
Geob_1301
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.592
Geob_1428
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.590
Geob_3805
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.584
Geob_3342
Radical SAM domain iron-sulfur cluster-binding oxidoreductase with cobamide-binding-like domain.
       0.498
Geob_3346
Lipoprotein, putative.
       0.483
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.