Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilRSigma-54-dependent transcriptional response regulator PilR; Domains: REC, sigma54 interaction, HTH8. (457 aa)    
Predicted Functional Partners:
pilS
Sensor histidine kinase PilS, PAS domain-containing; Domains: PAS, HisKA, HATPase_c.
 
 
  0.981
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.949
pilC
Type IV pilus inner membrane protein PilC.
     
 0.833
pilB
Type IV pilus biogenesis ATPase PilB.
     
 0.692
pilT-4
Twitching motility pilus retraction ATPase.
     
 0.611
gnfL
Nitrogen fixation master sensor histidine kinase, PAS domain-containing; Domains: PAS, HisKA, HATPase_c.
 
 
 0.581
fliM
Flagellar motor switch protein FliM.
  
  
 0.505
cheA64H-2
Sensor histidine kinase CheA associated with MCPs of classes 40H and 40+24H.
  
 
 0.473
fliP
Flagellar biogenesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
  
 0.455
ribF
Riboflavin kinase and FAD synthetase; Belongs to the ribF family.
     
 0.436
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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