Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Geob_3454Domains: HAMP, GAF, HD-GYP. (689 aa)    
Predicted Functional Partners:
Geob_1544
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF; possible homopolymeric tract sequence error.
 
 
 
 0.766
Geob_1992
Cyclic diguanylate phosphodiesterase; Domains: EAL.
 
 
 0.748
Geob_3426
Diguanylate cyclase; Domains: GGDEF.
 
 
 
 0.697
Geob_1181
Sensor diguanylate cyclase/phosphodiesterase, Cache_1, HAMP and PAS domain-containing; Domains: Cache_1, HAMP, PAS, GGDEF, EAL.
 
 
 
 0.696
Geob_1409
Diguanylate cyclase; Domains: GGDEF.
 
 
 0.696
Geob_0051
Response receiver sensor diguanylate cyclase, PAS domain-containing; Domains: REC, PAS, GGDEF.
 
 
 
 0.667
Geob_3576
Response receiver sensor diguanylate cyclase/phosphodiesterase, GAF and PAS domain-containing; Domains: REC, GAF, PAS, GGDEF, EAL.
 
 
 
 0.664
Geob_1072
Cyclic diguanylate phosphodiesterase, HAMP domain-containing; Domains: HAMP, HD-GYP.
 
  
0.661
Geob_1828
Diguanylate cyclase; Domains: GGDEF.
 
     0.649
Geob_1022
Response receiver sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing; Domains: REC, PAS, GGDEF, EAL.
 
   
 0.647
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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