Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mreCCell shape-determining protein MreC; Involved in formation and maintenance of cell shape. (274 aa)    
Predicted Functional Partners:
mreB
Cell shape-determining protein MreB.
 
 
 0.994
mreD
Cell shape-determining protein MreD, putative.
  
 
 0.988
mrdA
Peptidoglycan transpeptidase.
 
 
 0.976
rodA
Peptidoglycan glycosyltransferase MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.943
maf
Nucleotide/nucleic acid-binding septum formation-inhibiting protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.695
Geob_2597
Transpeptidase.
 
 
 0.679
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.656
Geob_3536
Helix-turn-helix domain protein.
 
 
 
 0.653
ftsI
Peptidoglycan transglycosylase and transpeptidase FtsI.
 
 
 0.646
Geob_0826
Transpeptidase.
 
 
 0.643
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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