Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycbLZinc-dependent hydrolase YcbL. (207 aa)    
Predicted Functional Partners:
Geob_0934
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein.
   
 0.907
larA
Lactate racemase.
     
 0.901
coaBC
Phosphopantothenylcysteine decarboxylase and phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
  
    0.820
yhaM
3'-to-5' exonuclease YhaM.
  
    0.796
Geob_3146
Flavin oxidoreductase, PfaD family, putative.
   
 
 0.623
Geob_3530
FAD-binding oxidoreductase, putative.
       0.531
purSL
Phosphoribosylformylglycinamidine synthetase, PurS and PurL domains; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and [...]
  
    0.530
Geob_0009
Response receiver sensor histidine kinase, PAS domain-containing; Domains: REC, PAS, HisKA, HATPase_c.
   
    0.523
Geob_1335
Cytochrome c, rhodanese homology domain trio-containing, 1 heme-binding motif.
  
 
 0.503
Geob_3147
Polyketide synthase.
   
 
 0.487
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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