Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_3564Sensor histidine kinase, PAS domain-containing; Domains: PAS, HisKA, HATPase_c. (737 aa)    
Predicted Functional Partners:
Geob_1844
Sensor histidine kinase response receiver, 4HB_MCP_1 and GAF domain-containing; Domains: 4HB_MCP_1, GAF, HisKA, HATPase_c, REC, REC, REC.
  
 
 0.872
Geob_3574
Response receiver; Domains: REC.
 
 
 
 0.861
Geob_3575
Response regulator; Domains: REC.
 
 
 
 0.837
Geob_1231
Response regulator, putative; Domains: REC.
 
 
 0.822
Geob_2207
Response regulator; Domains: REC.
 
 
 0.822
Geob_0046
Response receiver; Domains: REC.
 
 
 0.819
Geob_3731
Response regulator, putative; Domains: REC.
 
 
 0.814
Geob_3565
Domains: GAF, GAF, PAS, PAS, PAS, HisKA, HATPase_c.
 
 
 
0.797
cheY40H-3
Response receiver CheY associated with MCPs of class 40H.
 
 
 0.776
Geob_3566
Response receiver; Domains: REC.
 
 
 
 0.757
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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