Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Geob_3572Sensor histidine kinase; Domains: HisKA, HATPase_c. (256 aa)    
Predicted Functional Partners:
Geob_3566
Response receiver; Domains: REC.
 
 
 0.977
Geob_3574
Response receiver; Domains: REC.
 
 
 
 0.947
Geob_1844
Sensor histidine kinase response receiver, 4HB_MCP_1 and GAF domain-containing; Domains: 4HB_MCP_1, GAF, HisKA, HATPase_c, REC, REC, REC.
   
 
 0.944
Geob_1377
Response receiver; Domains: REC.
   
 
 0.935
Geob_0023
Response receiver histidine kinase; Domains: REC, HisKA, HATPase_c.
 
 
 
0.933
cheY40H-3
Response receiver CheY associated with MCPs of class 40H.
 
 
 
 0.931
Geob_2833
Sensor histidine kinase response receiver, HAMP domain-containing; Domains: HAMP, HisKA, HATPase_c, REC.
 
 
 
0.925
Geob_1173
Sensor histidine kinase response regulator, HAMP and PAS domain-containing; Domains: HAMP, PAS, HisKA, HATPase_c, REC.
   
 
 0.919
Geob_3701
Sensor histidine kinase, GAF domain-containing; Domains: GAF, HisKA, HATPase_c.
 
 
 
0.914
Geob_3781
Sensor histidine kinase, PAS and PAS domain-containing; Domains: PAS, PAS, HisKA, HATPase_c.
 
 
 
 0.902
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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