Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Geob_3574Response receiver; Domains: REC. (129 aa)    
Predicted Functional Partners:
cheY40H-3
Response receiver CheY associated with MCPs of class 40H.
 
 
 0.992
Geob_1825
Sensor histidine kinase, PAS, PAS, PAS and PAS domain-containing; Domains: PAS, PAS, PAS, PAS, HisKA, HATPase_c.
 
 
 0.987
Geob_3781
Sensor histidine kinase, PAS and PAS domain-containing; Domains: PAS, PAS, HisKA, HATPase_c.
 
 
 0.982
Geob_3566
Response receiver; Domains: REC.
 
 
 0.979
Geob_1844
Sensor histidine kinase response receiver, 4HB_MCP_1 and GAF domain-containing; Domains: 4HB_MCP_1, GAF, HisKA, HATPase_c, REC, REC, REC.
  
 
 0.970
Geob_1824
Domains: PAS, sensory_box, PAS, HisKA, HATPase_c.
 
 
 0.967
Geob_0435
Response regulator, PilZ domain-containing; Domains: REC, PilZ.
  
 
 0.962
Geob_1173
Sensor histidine kinase response regulator, HAMP and PAS domain-containing; Domains: HAMP, PAS, HisKA, HATPase_c, REC.
 
 
 0.956
Geob_1306
Pentapeptide repeat protein.
  
 
 0.956
Geob_0900
Domains: DUF3365, PAS, PAS, PAS, PAS, PAS.
 
 
 0.953
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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