Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pulE-3Type II secretion system ATPase PulE. (596 aa)    
Predicted Functional Partners:
gspF
Type II secretion system inner membrane protein GspF.
 
 
 0.935
pulF
Type II secretion system inner membrane protein PulF.
 
 
 0.935
pilC
Type IV pilus inner membrane protein PilC.
 
 
 0.935
gspE
Type II secretion system ATPase GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 
0.911
pilD
Type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.805
gspL
Type II secretion system protein GspL, putative.
  
 
 0.751
gspG
Type II secretion system major pseudopilin GspG.
 
 
 0.717
pilM
Type IV pilus biogenesis ATPase PilM.
 
 
 
 0.577
Geob_2620
Competence protein, ComEC-related, putative.
  
  
 0.567
pulG
Type II secretion system pseudopilin PulG.
  
 
 0.538
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.