Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
zapBCell division protein ZapB. (61 aa)    
Predicted Functional Partners:
Geob_1603
Helix-turn-helix transcriptional regulator, IclR family.
   
    0.904
zapA
Cell division protein ZapA.
  
 
 0.902
ftsY
Signal recognition particle GTPase FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
       0.613
Geob_3596
GTPase-activating protein, putative.
       0.610
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
   
    0.567
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
    0.532
Geob_1536
Cold shock DNA/RNA-binding protein.
   
    0.524
Geob_2148
YdcF-like protein of unknown function DUF218.
   
    0.522
smc
Chromosome segregation ATPase SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.480
Geob_0226
Helix-turn-helix transcriptional regulator, IclR family.
   
    0.466
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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