Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Geob_3774N-acetyltransferase, GNAT family. (169 aa)    
Predicted Functional Partners:
argE
N-acetylornithine deacetylase, putative.
 
     0.949
Geob_3772
Hypothetical protein.
       0.661
Geob_3775
Glycoside hydrolase, family 15.
       0.556
norM-1
Sodium-driven efflux pump, MatE and MatE domain-containing; Domains: MatE, MatE.
       0.531
Geob_3913
Hypothetical protein.
       0.531
Geob_2317
Phasin superfamily protein.
  
     0.458
Geob_0931
Amino acid aminotransferase, putative.
  
   
 0.449
Geob_0389
Hypothetical protein.
  
     0.416
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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