Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
rnjMetal-dependent hydrolase, beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa)    
Predicted Functional Partners:
ispB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.767
ispA
(2E,6E)-farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.767
Geob_3798
(acyl)-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
  
    0.682
Geob_3800
Hypothetical protein.
       0.629
rny
Endoribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.628
Geob_3802
FtsK/SpoIIIE domain protein.
       0.627
Geob_3799
Hypothetical protein.
       0.611
def-2
Polypeptide formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.550
thrC
Threonine synthase.
   
    0.528
Geob_3803
Amino acid-binding ACT domain regulatory protein.
       0.514
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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