STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Geob_3834Lipoprotein, putative. (248 aa)    
Predicted Functional Partners:
Geob_3833
Hypothetical protein.
       0.645
Geob_1315
Hypothetical protein.
  
     0.559
Geob_3000
Membrane protein, putative.
  
     0.517
Geob_2842
Hypothetical protein.
  
     0.500
rsmG
16S rRNA (guanosine527-N7)-methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.426
Geob_1616
4-oxalocrotonate tautomerase superfamily protein.
   
    0.418
mnmG
tRNA (uridine34-C5)-methyleneglycinetransferase, FAD-binding subunit; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.407
Your Current Organism:
Geobacter daltonii
NCBI taxonomy Id: 316067
Other names: G. daltonii FRC-32, Geobacter daltonii FRC-32, Geobacter daltonii str. FRC-32, Geobacter daltonii strain FRC-32, Geobacter sp. FRC-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.